Shortcut: SKETCHMAP_PROJECTION
| Module | dimred |
|---|---|
| Description | Usage |
| Read in a sketch-map projection |   |
| output value | type |
| the out-of-sample projections of the input arguments using the input sketch-map projection | scalar/vector |
Input
The arguments that serve as the input for this action are specified using one or more of the keywords in the following table.
| Keyword | Type | Description |
|---|---|---|
| ARG | scalar | the list of arguments you would like to use in your definition of the path |
Further details and examples
Text from manual goes here
Syntax
The following table describes the keywords and options that can be used with this action
| Keyword | Type | Default | Description |
|---|---|---|---|
| ARG | input | none | the list of arguments you would like to use in your definition of the path |
| REFERENCE | compulsory | none | a pdb file containing the set of reference configurations |
| TYPE | compulsory | OPTIMAL-FAST | the manner in which distances are calculated |
| PROPERTY | compulsory | none | the property to be used in the index |
| WEIGHT | compulsory | none | the weight of each individual landmark in the stress fucntion that is to be optimised |
| HIGH_DIM_FUNCTION | compulsory | none | the parameters of the switching function in the high dimensional space |
| LOW_DIM_FUNCTION | compulsory | none | the parameters of the switching function in the low dimensional space |
| CGTOL | compulsory | 1E-6 | The tolerance for the conjugate gradient minimization that finds the out of sample projections |
| COEFFICIENTS | optional | not used | the coefficients of the displacements along each argument that should be used when calculating the euclidean distance |
| NOPBC | optional | false | ignore the periodic boundary conditions when calculating distances |
| NOSPATH | optional | false | do not calculate the spath CV |
| NOZPATH | optional | false | do not calculate the zpath CV |
| GPATH | optional | false | calculate the trigonometric path |