Action: REPARAMETERIZE_PATH
| Module | mapping |
|---|---|
| Description | Usage |
| Take an input path with frames that are not equally spaced and make the frames equally spaced |   |
| This action outputs data to a file. You can read more about how PLUMED manages output files here |
Input
The arguments that serve as the input for this action are specified using one or more of the keywords in the following table.
| Keyword | Type | Description |
|---|---|---|
| ARG | matrix | the labels of the matrix that contains the vectors of displacements from each frame in the path |
| REFERENCE | vector | labels for actions that contain reference coordinates for each point on the path |
Further details and examples
Text from manual goes here
Syntax
The following table describes the keywords and options that can be used with this action
| Keyword | Type | Default | Description |
|---|---|---|---|
| ARG | input | none | the labels of the matrix that contains the vectors of displacements from each frame in the path |
| REFERENCE | input | none | labels for actions that contain reference coordinates for each point on the path |
| METRIC | compulsory | none | the method to use for computing the displacement vectors between the reference frames |
| METRIC_COMPONENT | compulsory | none | if the final action in your metric contains multiple components this keyword is used to specify the component that should be used |
| STRIDE | compulsory | 1 | the frequency with which to reparameterize the path |
| FIXED | compulsory | 0 | the frames in the path to fix |
| MAXCYLES | compulsory | 100 | number of cycles of the algorithm to run |
| TOL | compulsory | 1E-4 | the tolerance to use for the path reparameterization algorithm |
| DISPLACE_FRAMES | optional | not used | label of an action that tells us how to displace the frames |